MRIQC: individual T1w report

Summary

Subject ID: 044_ExercisePre.
Date and time: 2018-05-06, 21:12.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.25295455139021683
cnr			4.800934887006745
efc			0.5879720969826226
fber			99.23409271240234
fwhm	avg		3.58602
fwhm	x		3.54871
fwhm	y		3.83986
fwhm	z		3.36949
icvs	csf		0.16215021863546814
icvs	gm		0.511229817103548
icvs	wm		0.3266199642609839
inu	med		0.9974812269210815
inu	range		0.32216643095016473
qi	1		0.0
qi	2		0.0011118738839113337
rpve	csf		33.29802881530153
rpve	gm		12.479066892752437
rpve	wm		20.560463353522877
size	x		180
size	y		256
size	z		256
snr	csf		2.219996828102306
snr	gm		11.007913463767334
snr	total		10.765057284499699
snr	wm		19.067261561629458
snrd	csf		15.170710149680543
snrd	gm		31.73244696913356
snrd	total		32.592401477752546
snrd	wm		50.87404731444354
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.8452255629327516
summary	bg	mad	12.877657890319824
summary	bg	mean	51.851619720458984
summary	bg	median	51.046871185302734
summary	bg	n	2844871.0
summary	bg	p05	31.95773220062256
summary	bg	p95	74.92452621459961
summary	bg	stdv	13.446025848388672
summary	csf	k	16.877328460166733
summary	csf	mad	110.96333312988281
summary	csf	mean	321.4983825683594
summary	csf	median	298.2023620605469
summary	csf	n	11109.0
summary	csf	p05	155.131787109375
summary	csf	p95	523.7067138671875
summary	csf	stdv	134.3195343017578
summary	gm	k	0.8702044108729452
summary	gm	mad	50.837493896484375
summary	gm	mean	627.1173706054688
summary	gm	median	623.7473754882812
summary	gm	n	61503.0
summary	gm	p05	540.5733581542969
summary	gm	p95	727.9801025390624
summary	gm	stdv	56.663082122802734
summary	wm	k	1.2876631700674048
summary	wm	mad	44.33816909790039
summary	wm	mean	992.9866333007812
summary	wm	median	1000.0033569335938
summary	wm	n	162201.0
summary	wm	p05	892.6107177734375
summary	wm	p95	1065.9185791015625
summary	wm	stdv	52.44593048095703
tpm	overlap	csf	0.21163122355937958
tpm	overlap	gm	0.5477677583694458
tpm	overlap	wm	0.5268206596374512
wm2max			0.6237196698984646

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	ca8f44126ec449771abfec1cedb14e1d
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.