MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.25295455139021683
cnr4.800934887006745
efc0.5879720969826226
fber99.23409271240234
fwhmavg3.58602
fwhmx3.54871
fwhmy3.83986
fwhmz3.36949
icvscsf0.16215021863546814
icvsgm0.511229817103548
icvswm0.3266199642609839
inumed0.9974812269210815
inurange0.32216643095016473
qi10.0
qi20.0011118738839113337
rpvecsf33.29802881530153
rpvegm12.479066892752437
rpvewm20.560463353522877
sizex180
sizey256
sizez256
snrcsf2.219996828102306
snrgm11.007913463767334
snrtotal10.765057284499699
snrwm19.067261561629458
snrdcsf15.170710149680543
snrdgm31.73244696913356
snrdtotal32.592401477752546
snrdwm50.87404731444354
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.8452255629327516
summarybgmad12.877657890319824
summarybgmean51.851619720458984
summarybgmedian51.046871185302734
summarybgn2844871.0
summarybgp0531.95773220062256
summarybgp9574.92452621459961
summarybgstdv13.446025848388672
summarycsfk16.877328460166733
summarycsfmad110.96333312988281
summarycsfmean321.4983825683594
summarycsfmedian298.2023620605469
summarycsfn11109.0
summarycsfp05155.131787109375
summarycsfp95523.7067138671875
summarycsfstdv134.3195343017578
summarygmk0.8702044108729452
summarygmmad50.837493896484375
summarygmmean627.1173706054688
summarygmmedian623.7473754882812
summarygmn61503.0
summarygmp05540.5733581542969
summarygmp95727.9801025390624
summarygmstdv56.663082122802734
summarywmk1.2876631700674048
summarywmmad44.33816909790039
summarywmmean992.9866333007812
summarywmmedian1000.0033569335938
summarywmn162201.0
summarywmp05892.6107177734375
summarywmp951065.9185791015625
summarywmstdv52.44593048095703
tpmoverlapcsf0.21163122355937958
tpmoverlapgm0.5477677583694458
tpmoverlapwm0.5268206596374512
wm2max0.6237196698984646

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumca8f44126ec449771abfec1cedb14e1d
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.